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extract-idsΒΆ

seqmagick extract-ids is extremely simple - all the IDs from a sequence file are printed to stdout (by default) or the file of your choosing:

usage: seqmagick extract-ids [-h] [-o OUTPUT_FILE]
                             [--input-format INPUT_FORMAT] [-d]
                             sequence_file

Extract the sequence IDs from a file

positional arguments:
  sequence_file         Sequence file

optional arguments:
  -h, --help            show this help message and exit
  -o OUTPUT_FILE, --output-file OUTPUT_FILE
                        Destination trimmed file
  --input-format INPUT_FORMAT
                        Input format for sequence file
  -d, --include-description
                        Include the sequence description in output [default:
                        False]